LOC_Os09g07120

Expression Profile

RGAP LOCUS ID LOC_Os09g07120
RAP-DB ID Os09g0246200
Function DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Mitochondrial
score 2.945

3) NUCPRED Prediction
localization Nuclear
score 0.81

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.23
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRpoTm
Function assigned as per literature
Subcellular localization as per literature Mitochondria (N-terminal regions OsRpoTm was used )
Cells used for localization experiment Tobacco suspension-cultured green cells (cell line N-1)
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 15509842
Reference of localization https://academic.oup.com/pcp/article/45/9/1194/1857638
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.142
NLS score -0.1
Protein Sequence >LOC_Os09g07120.1 protein
MPSSPTPATAPISCSPSPPLHLHLTARRQTLAPPMWRRLPARRLASALLSSSAPLPHPLHRSLLLLLPAASQRLAPSQTLPRFASSSAAVAAESVSSEEV
DELHHAIGEIARGDPSVSAPAPAAGQEGHRRRSGRGKHSAEAMAVPAAGQEGHRRRSGRGKHSAEAMAVHGVGYHKYAMLRRRQIQIETEAWEQAAEEYR
ELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVR
IHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIR
PAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNT
LGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGR
AYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEA
LRSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSV
YGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVL
TLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPE
RGDFDLTDVLGSPYFFN

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Cellular comBiological Processonent
GO Term mitochondrion
7
GO Category Cellular comBiological Processonent
GO Term membrane
8
GO Category Cellular comBiological Processonent
GO Term thylakoid
9
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES