LOC_Os09g05020
| RGAP LOCUS ID | LOC_Os09g05020 | ||||
| RAP-DB ID | Os09g0135700 | ||||
| Function | tyrosine phosphatase family protein, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | cyto | ||||
| score | 6 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 2.098 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.31 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 99.82 | ||||
| confidence value | 0.94 | ||||
| Number Of Software Predicting Nucleus | 2 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsPFA-DSP1 | ||||
| Function assigned as per literature | OsPFA-DSP1 is a functional PTP and may act as a negative regulator in drought stress response | ||||
| Subcellular localization as per literature | Cytoplasm | ||||
| Cells used for localization experiment | rice protoplasts | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 22218675 | ||||
| Reference of localization | https://link.springer.com/article/10.1007/s00299-011-1220-x | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.117 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os09g05020.2 protein MRQEATCSLVLTQDAQHRKNQPPLAEEDDDRDHTDDAMPPPCSILLRQEEGEATAAAAGEGLLVPPLNFAMVDHGVYRSGFPDISNLPFVESLRLRSVLC LCPEPYPEANQEFLRAHGIRLFQFGIDGSKEPFVNIPEDRIREALKVVLDVANHPVLIHCKRGKHRTGCVVGCLRKLQRWCLTSIFDEYQRFAAAKARVS DLRFMELFDISSLKHLPASFSC |
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GO Analysis |
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| Presence of Splice variants | YES | ||||