LOC_Os09g04890

Expression Profile

RGAP LOCUS ID LOC_Os09g04890
RAP-DB ID Os09g0134500
Function histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 3.991

3) NUCPRED Prediction
localization Non Nuclear
score 0.77

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.95
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category PHD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTrx1|SDG723
Function assigned as per literature OsTrx1 plays an important role in regulating flowering time in rice by modulating chromatin structure
Subcellular localization as per literature Nucleus
Cells used for localization experiment protoplasts isolated from rice mesophyll or Oc cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 24420930
Reference of localization http://www.plantphysiol.org/content/164/3/1326.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 8
Number of PAT7 4
Number of Bipartite 1
Basic residues % 0.141
NLS score 3.7
Protein Sequence >LOC_Os09g04890.1 protein
MVIAVEGGFVHEEEEVDHPIRYLPLGRVYSSSAPCPLPKKPRSAEDGKPPVIVYYRRRRKKPRVEGPPPSPATAPPMLHPREDDEDEEVTRRKGSLKYEL
LSLGQAPPALGGDGEEPARRRCLRRSGGAERRGYFSEPKRRQRQGVHKEAASSAGRRWLELEIEAADPLAFVGLGCKVFWPLDEDWYKGSITGYNEATKK
HSVKYDDGESEDLNLADERIKFSISSEEMKCRNLKFGISNLNKRGYDELLALAVSLHDYQGLDPGDLVWAKLTGHAMWPAVVVDESNVPANRALKPGRLD
QSILVQFFGTHDFARIKLKQAVPFLNGLLSSLHLKCKQARFYRSLEEAKEFLCTQLLPENMLQLQKSMEKGSSDANSNKDVHSCDNLSEDKTAESGGDYD
EMTPIELGNLRVSKLGRIVTDSDYFHNKKHIWPEGYTAFRKFRSVKDPHVVILYKMEVLRNSDIKARPLFRVTSEDGTQIDGSTPNTCWKEIYCRLKEKQ
RNVASGLDRDVCQGSGSYMFGFSNPQIRQLIQELPNARSCLKYFENAGDTFRGYRAVHVNWKDLDYCSVCDMDEEYEDNLFLQCDKCRMMVHARCYGELE
PLNGVLWLCNLCRPEAPRVSPRCCLCPVTGGAMKPTTDGRWAHLACAIWIPETCLKDVKRMEPIDGLSRINKDRWKLLCSICGVAYGACIQCSHPTCRVA
YHPLCARAADLCVELEDDDKIHLMLLDEDEDPCIRLLSYCKKHRQPSTERPSLESNLAKPAVVVQTDAVPPSGCARTEPYNIHGRRGQKQPQVMATASVK
RLYVENMPYIVSGFCQNRVGHDAISEPIQSVGFLDVAHQEAVGNVSSMIEKYKSMKATFRRRLAFGKSRIHGFGVFAKVSHKAGDMMIEYIGELVRPPIS
DIRERRIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVLGDEHIIIFAKRDINPWEELTYDYRFVSSDQRLPCYCGFPKCRGVV
NDVEAEGQSAKIRVNRSELFQQ

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term transferase activity
6
GO Category Biological Process
GO Term cellular component organization
7
GO Category Biological Process
GO Term protein modification process
Presence of Splice variants No