LOC_Os09g03610

Expression Profile

RGAP LOCUS ID

LOC_Os09g03610

RAP-DB ID

Os09g0123200

Function

flowering time control protein FCA, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

12.5

2) CELLO Prediction

localization

Nuclear

score

3.955

3) NUCPRED Prediction

localization

Non Nuclear

score

0.6

4) Y-Loc Prediction

localization

Nuclear

score

97.44

confidence value

0.28

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

FCA|OsFCA

Function assigned as per literature

Subcellular localization as per literature

Nucleus

Cells used for localization experiment

N. benthamiana leaves

NUCLEAR or Not Nuclear

NUCLEAR

PMID

19561057

Reference of localization

https://academic.oup.com/pcp/article/50/8/1479/1814026

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.081

NLS score

0.21

Protein Sequence

>LOC_Os09g03610.1 protein
MHRGGDRSTDPSSGPAPGSRGGGDGRFGRGPSRWSSGGGGGGSGSPPHRFSRGGGGGGGDGGGGGGGGGRFHPYRGPSDHSGGGGYRSGGGGEYGEPGSG
PRHRYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRY
ADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRPRPGE
SRGGPAFGGPGFSPRSDAALVIRPTANLDEPRGRHMPPDSWHPSSPRSAPHQFNNFGSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPSSSH
MGMNPPPMAQGHHLGGQQIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQIGQLQVPQSMGPGSFGQNRLSGQLPVSQPLMQQNASVSAVQVPSAVSNS
MQAIPGQQHLPSNVAPQMLQQPVQQMPSQAPQLLLQQQAALQSSYQSSQQAIYQLQQQLQLMQQQQQSNLNHQQPTQGQPVQSSNPGAPNAIIPSNINTI
PQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYEQQQQQQQQQKLLLLQQHQQKLAMQQLQSPPQAQTHPAMQPVQQIPQAQQGQQQ
MQMKQQELNYTQLQTPGAIDPSRIQQGIQSAQERAWKS

GO Analysis

GO Category	Biological Process
GO Term	regulation of gene expression, epigenetic

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Molecular Function
GO Term	RNA binding

GO Category	Cellular comBiological Processonent
GO Term	intracellular

GO Category	Biological Process
GO Term	embryo development

GO Category	Biological Process
GO Term	flower development

GO Category	Biological Process
GO Term	multicellular organismal development

Presence of Splice variants

YES