LOC_Os09g01680

Expression Profile

RGAP LOCUS ID LOC_Os09g01680
RAP-DB ID Os09g0104200
Function DNA repair protein RAD51 homolog 4, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization Cytoplasmic
score 1.116

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Nuclear
score 56.65
confidence value 0.11
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRAD51D
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score -0.47
Protein Sequence >LOC_Os09g01680.1 protein
MAMAATSASGGAGCFPRPPPSGGEEKKQDEEGQCFLDGMDLLKDATENKRFLPTGLQGVDALLGGGLRQGQLTEITGQSSSGKTQVCLCSASHVAARQLG
VVMYLDTSNSFSPSRIARIVDGFPISLVREPKNVRLERVMSSIICKSVFDIFDLFEVLHQLELSLKSKVNNGGNKICLLIIDSISSILAPINGGKYPRGR
SMMISVAMILKKLAYEHNLSVLVTNHMVAGNGAPKPALGESWKTVPHVRLVISRERGSKICAATVLKHTLLASGRVMKFAVPS

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term DNA metabolic process
5
GO Category Molecular Function
GO Term nucleotide binding
6
GO Category Biological Process
GO Term response to biotic stimulus
7
GO Category Cellular comBiological Processonent
GO Term cell
8
GO Category Molecular Function
GO Term hydrolase activity
9
GO Category Biological Process
GO Term catabolic process
10
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants YES