LOC_Os08g44820

Expression Profile

RGAP LOCUS ID LOC_Os08g44820
RAP-DB ID Os08g0562200
Function no apical meristem protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 1.98

3) NUCPRED Prediction
localization Non Nuclear
score 0.41

4) Y-Loc Prediction
localization Nuclear
score 86.04
confidence value 0.14
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category NAC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNTL5
Function assigned as per literature OsNTL5 functions as a transcriptional repressor to suppress flowering in rice as an upstream factor of Ehd1.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29774039
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2018.00555/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.076
NLS score -0.47
Protein Sequence >LOC_Os08g44820.1 protein
MSHPSSSSSSAPPAAAEATSLAPGFRFHPTDEELVSYYLKRKVHGRPLKVDAIAEVDLYKVEPWDLPARSRLRSRDSQWYFFSRLDRKHANRARTNRATA
GGYWKTTGKDREVRNGPTTVGMKKTLVFHAGRAPKGERTNWVMHEYRLDGQTTIPPQDSFVVCRIFQKAGPGPQNGAQYGAPFVEEEWEEDDEDVGLLPV
EEKDNSDDQEKEISGAMEKGYLQMSDLVQNLVDQNENGTIALPVSDNSNNSNHSEDVDGNSGDILSDQNLGSNFLHHVEPVEQNGLVLNENMFSSANAGD
LFNISSPNDGFLELKDFADIADLENPLANESTIWPSDGWPWKSTDSMEAVNGASNEFSPLAGEQIFQPEELEQLLQSLQEDSHMGSTISDPPHSSITNLA
KPEEDCLMFYDAPFDSSMCDDGFRQLNGFLGSPSTNLSGIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYTYSPTQKVLE
PNFVVGAPSSARLPEAGSQLNYVVLPDSQTKSSLIGKRFVKILDSISAPPAFAAAEFPASLRKSLAPISGAHHNTIRVSAEVISIGSLTPDSQDKWSLEK
DEGMELLFSAGFEPDTRVHFGCNTITAVLRGGFCLFFFSAIMLLVSYEVGMCIYGK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants YES