| RGAP LOCUS ID |
LOC_Os08g44770 |
| RAP-DB ID |
Os08g0561700 |
| Function |
copper/zinc superoxide dismutase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
3.83 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.01 |
4) Y-Loc
Prediction
|
| localization |
Secreted pathw |
| score |
|
| confidence value |
0.38 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsCu|Zn-SOD |
| Function assigned as per literature |
OsCu/Zn-SOD enzyme is involved in saline–sodic stress resistance in rice |
| Subcellular localization as per literature |
Chloroplast |
| Cells used for localization experiment |
Onion epidermal cells and arabidopsis protoplast |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
29020034 |
| Reference of localization |
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0186052 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.057 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os08g44770.1 protein
MQAILAAAMAAQTLLFSATAPPASLFQSPSSARPFHSLRLAAGPAGAAAARALVVADATKKAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLH
GFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGR
LACGVVGLTPL |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
extracellular region |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
