LOC_Os08g44590

Expression Profile

RGAP LOCUS ID LOC_Os08g44590
RAP-DB ID Os08g0560000
Function gibberellin 20 oxidase 2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 11

2) CELLO Prediction
localization Cytoplasmic
score 1.041

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Cytoplasm
score 70
confidence value 0.75
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SLC1
Function assigned as per literature SLC1 play important role in the shoot development of rice.
Subcellular localization as per literature Cytoplasm and nucleus
Cells used for localization experiment Rice protoplasts and tobacco leaf epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 31701152
Reference of localization https://academic.oup.com/jxb/advance-article-abstract/doi/10.1093/jxb/erz501/5614540?redirectedFrom=fulltext
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.104
NLS score -0.47
Protein Sequence >LOC_Os08g44590.1 protein
MAIVDLVNAGEQQQMGSKRAAAEDGDGGVDDSREYYCRRGVRHLCDSGITRLPGNYVLPASDRPGQAAGAAAAAGGSVKLPVVDLSRLRVPSERGAVLRT
LDAACREYGFFQVVNHGVGGEVVGGMLDVARRFFELPQPERERYMSADVRAPVRYGTSFNQVRDAVLCWRDFLKLACMPLAAVVESWPTSPADLREVASR
YAEANQRVFMEVMEAALEALGVGGGGVMEDLAAGTQMMTVNCYPECPQPELTLGMPPHSDYGFLTLVLQDEVAGLQVMHAGEWLTVDPLPGSFVVNVGDH
LEILSNGRYRSVLHRVKVNSRRLRVSVASFHSVAPERVVSPAPELIDDRHPRRYMDTDLATFLAYLASAAGNHKSFLHSRRLY

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Molecular Function
GO Term catalytic activity
4
GO Category Biological Process
GO Term metabolic process
Presence of Splice variants No