LOC_Os08g43334

Expression Profile

RGAP LOCUS ID LOC_Os08g43334
RAP-DB ID Os08g0546800
Function HSF-type DNA-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 3.388

3) NUCPRED Prediction
localization Non Nuclear
score 0.61

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.05
Number Of Software Predicting Nucleus 2
Seed Specific Yes
Transcription factor category HSF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHsfB2b
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 2
Basic residues % 0.117
NLS score 1.57
Protein Sequence >LOC_Os08g43334.1 protein
MKGSRLAVKESCLPMTMPMPETFAQYSNPLRSTRAYGQLCRVPGRRRHACVDGWGQDRARTRGDDGQRRYAQCRGGWGDIWRWGGYITCGSPRETGMVNG
APSPPPPSPMVMSFGPLDSPWVKQPDTTVYPGQICAAAGGGGGMADQTAAAVVVGGGAAATMGEPSPPPPAPAAEAAGVGVGQQQRTVPTPFLTKTYQLV
DDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVTPPAPAATTAAVAAAIP
MALPVTTTRDGSPVLSGEEQVISSSSSPEPPLVLPQAPSGSGSGGVASGDVGDENERLRRENAQLARELSQMRKLCNNILLLMSKYASTQQLDAANASSA
AGNNNNNNCSGESAEAATPLPLPAVLDLMPSCPGAASAAAPVSDNEEGMMSAKLFGVSIGRKRMRHDGGGDDDHAATVKAEPMDGRPHGKDEQSAETQAW
PIYRPRPVYQPIRACNGYEYDRAGSDQDECGAKPSNQDKKDLLRRWVVLISESLQLHGRQVVGAVQEWRRDRRGHRRPPAGHVQLRTCVNNLLVTGAGTL
DAGREYETNSLPRPRR

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term biological_process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES