LOC_Os08g43160

Expression Profile

RGAP LOCUS ID LOC_Os08g43160
RAP-DB ID Os08g0544800
Function TCP family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 3.125

3) NUCPRED Prediction
localization Non Nuclear
score 0.56

4) Y-Loc Prediction
localization Nuclear
score 99.19
confidence value 0.94
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category TCP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) PCF2|OsPCF2
Function assigned as per literature OsPCF2 may be associated with the salt and drought stress tolerance
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 27766460
Reference of localization https://link.springer.com/article/10.1007/s11103-016-0547-7
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.078
NLS score 0.15
Protein Sequence >LOC_Os08g43160.1 protein
MEAQAQDKAEEGEEEGTRQQHAQAGPVGAAGGGGGGGAAAVAMSAIPMNSWLVPKPEPVEFFGGMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIF
QLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATTVDGVLRIPTQSSSSSGPASSAVVDGEESSAKRRRKLQPTRAVAGASPLATAAPAAYYPV
IADPLLQGSGGAAISVPSGLAPITATGAPQGLVPVFAVPATGSPAVAGGNRMIPQATAVWMVPQPAGAAGAGNQPTQFWAIQSAPQLVNFAGAQFPTAIN
VADFQQQQQQQPVSTTIVQNSNSGEHMHFSGADSHEQQRRGRKEGNSGGVVDHPEEDEDDDDDEPVSDSSPEE

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No