| RGAP LOCUS ID |
LOC_Os08g42850 |
| RAP-DB ID |
Os08g0541400 |
| Function |
peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
13 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
2.351 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.18 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.9 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsFKBP16-3 |
| Function assigned as per literature |
OsFKBP16-3 plays a role in maintaining photosynthetic acclimation or the integrity of the photosystem apparatus under various environmental stresses |
| Subcellular localization as per literature |
Chloroplast |
| Cells used for localization experiment |
Nicotiana benthamiana leaves |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
23485991 |
| Reference of localization |
https://www.mdpi.com/1422-0067/14/3/5899/htm |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.11 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os08g42850.4 protein
MAATASSSSTATASPLLLPSARRPLPSSKPWLPDGRAFRGSRALSSAARRCFCCCCRCEAAGEAGTAPPPQQRGVDDGGVVCTSATRSRRRSVLGVAVGV
SSALALGLAAFDDALAAGLPPEEKPKLCDAACEKDLENVPMVTTESGLQYKDIKVGEGPSPPIGFQVAANYVAMVPNGQIFDSSLEKGQPYIFRVGSGQV
IKGLDEGILSMKVGGLRRLYIPGPVSSLNSPMSTNIMQEKMKDVVNLGPDNCSHCYGIIFPLLAQRFERRVII |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| Presence of Splice variants |
YES |
