LOC_Os08g42600

Expression Profile

RGAP LOCUS ID LOC_Os08g42600
RAP-DB ID Os08g0538700
Function retinoblastoma-related protein-like, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 3.5

2) CELLO Prediction
localization Nuclear
score 2.206

3) NUCPRED Prediction
localization Nuclear
score 0.82

4) Y-Loc Prediction
localization Cytoplasm
score 90
confidence value 0.59
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category RB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRBR1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.125
NLS score 0.12
Protein Sequence >LOC_Os08g42600.1 protein
MEGAAPPASSGSEVTGAGSGKVDAGGGAAMEERFADLCKSKLGLDESITRQAMQLFKESKSILLSSMSSLGSGSPEEIERFWSAFVLYCVSRLGKAGKGK
EDGGISLCQILRAFSLNIVDFFKEMPQFCIKVGSVLAGLYGSDWEKRLELKELQANVVHLSLLSRYYKRAYQELFLLNDAKPPENSAEPNAQASDYYRFG
WLLFLVLRIQTFSRFKDLVTSTNGLVSVLAVLIVHIPVRLRNFNIKESSSFAKKSDKGVNLIASLCEKYHTSEDELSKAIEKTNTLIVDILKKKPCPAAS
ECQQDRLSFIDPEGLTYFKNLLEEDSLKLSLLMLEKEYENAINTKGELDERMFANDEDSLLGSGSLSGGAINLPGTKRKYDVMASPAKSITSPSPMSPPR
FCASPTGNGYCSSKMAPITPVSTAMTTAKWLRSTISPLPSKPSGELLRFFSACDKDVTDDITRRAGIILGAIFTSSSFGERICTSVRSTNRIDAIWTEQR
KMEALKLYYRVLESMCRAETQILSGNNLTSLLSNERFHRCMIACSAELVLATHKTVTMMFPAVLEKTGITAFDLSKVIESFVRHEDTLPRELKRHLNSLE
ERLLESMAWEKGSSMYNSLIVARPTLSAEINRLGLLAEPMPSLDAIAAHHNISLEGLPPLPFQKQEHSPDKDEVRSPKRACTERRNVLVDNNSFRSPVKD
TLKSKLPPLQSAFLSPTRPNPAAGGELCAETGIGVFLSKIAKLAAIRIRGLCERLQLSQQVLERVYSLVQQIIIQQTALFFNRHIDQIILCSIYGVAKIS
QLALTFKEIIFGYRKQSQCKPQVFRSVYVHWASRSRNGKTGEDHVDIITFYNEVFIPTVKPLLVELGSGTSPNKKNEEKCAADAGPYPESPRLSRFPNLP
DMSPKKVSAAHNVYVSPLRTSKMDTLLSPSSKSYYACVGESTHAFQSPSKDLKVINNRLNSGKKVSGRLNFDVVSDLVVARSLSDQNSASAAATTADIAT
KTPVKLEQPDC

GO Analysis
1
GO Category Biological Process
GO Term DNA metabolic process
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term cell cycle
4
GO Category Biological Process
GO Term cell differentiation
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Biological Process
GO Term reproduction
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Cellular comBiological Processonent
GO Term cytosol
11
GO Category Biological Process
GO Term post-embryonic development
12
GO Category Biological Process
GO Term cellular component organization
13
GO Category Biological Process
GO Term cell growth
14
GO Category Biological Process
GO Term cellular process
15
GO Category Biological Process
GO Term anatomical structure morphogenesis
Presence of Splice variants YES