| RGAP LOCUS ID |
LOC_Os08g42580 |
| RAP-DB ID |
Os08g0538300 |
| Function |
protein kinase domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Mitochondrial |
| score |
1.026 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.19 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.46 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsCERK1 |
| Function assigned as per literature |
OsCERK1 is an interactor of RACK1A |
| Subcellular localization as per literature |
OsCERK1 is colocalizd with RACK1A in plasma membrane and ER |
| Cells used for localization experiment |
rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24280008 |
| Reference of localization |
https://link.springer.com/article/10.1186/1939-8433-5-35 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.101 |
| NLS score |
-0.16 |
| Protein Sequence |
>LOC_Os08g42580.1 protein
MRLHEGKGASAGAIAGGVVAGVVVLAAIFLYIIFYRRRKAKQATLLQSSEDSTQLGTISMDKVTPSTIVGPSPVAGITVDKSVEFSYEELSNATQGFSIG
NKIGQGGFGAVYYAELRGEKAAIKKMDMQATHEFLAELKVLTHVHHLNLVRLIGYCIESSLFLVYEFIENGNLSQHLRGMGYEPLSWAARIQIALDSARG
LEYIHEHTVPVYIHRDIKSANILIDKNYRAKVADFGLTKLTEVGGTSMPTGTRVVGTFGYMPPEYARYGDVSPKVDVYAFGVVLYELISAKEAIVRSTES
SSDSKGLVYLFEEALNSPDPKEGLRTLIDPKLGEDYPIDSILKLTQLAKVCTQEDPKLRPSMRSVVVALMTLSSTSEFWDMNNLYENQGLVNLMSGR |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
kinase activity |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
receptor activity |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
signal transducer activity |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| Presence of Splice variants |
YES |
