LOC_Os08g42540

Expression Profile

RGAP LOCUS ID LOC_Os08g42540
RAP-DB ID Os08g0537800
Function ubiquitin thioesterase otubain-like, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 1.694

3) NUCPRED Prediction
localization Non Nuclear
score 0.17

4) Y-Loc Prediction
localization Nuclear
score 69.11
confidence value 0.26
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WTG1|OsOTUB1
Function assigned as per literature OsTUB1 functions as a key QTL responsible for OsSPL14-mediated control of the NPT architecture and is associated with reduced tiller number, increased lodging resistance and higher grain yield in rice
Subcellular localization as per literature nuclear and cytoplasm; Specific localization in nucleus when interactng with SPL14
Cells used for localization experiment rice root tip and leaf sheath cells; rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 28776570
Reference of localization https://www.nature.com/articles/cr201798
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.095
NLS score -0.47
Protein Sequence >LOC_Os08g42540.1 protein
MGGDYYHSCCGDPDPDLRAPEGPKLPYVGDKEPLSTLAAEFQSGSPILQEKIKLLGEQYDALRRTRGDGNCFYRSFMFSYLEHILETQDKAEVERILKKI
EQCKKTLADLGYIEFTFEDFFSIFIDQLESVLQGHESSIGAEELLERTRDQMVSDYVVMFFRFVTSGEIQRRAEFFEPFISGLTNSTVVQFCKASVEPMG
EESDHVHIIALSDALGVPIRVMYLDRSSCDAGNISVNHHDFSPEANSSDGAAAAEKPYITLLYRPGHYDILYPK

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES