| RGAP LOCUS ID |
LOC_Os08g42350 |
| RAP-DB ID |
Os08g0535200 |
| Function |
nodulin MtN3 family protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
11 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
4.894 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.07 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
6 |
| confidence value |
0.18 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
Os8N3|xa13|OsSWEET11 |
| Function assigned as per literature |
Os8N3/Xa13 interacted with OsAPX8 and their binding repressed the reaction of OsAPX8 in tolerance to bacterial blight |
| Subcellular localization as per literature |
Chloroplasts |
| Cells used for localization experiment |
TP309 protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
27185545 |
| Reference of localization |
https://www.nature.com/articles/srep26104 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.072 |
| NLS score |
0.21 |
| Protein Sequence |
>LOC_Os08g42350.1 protein
MAGGFLSMANPAVTLSGVAGNIISFLVFLAPVATFLQVYKKKSTGGYSSVPYVVALFSSVLWIFYALVKTNSRPLLTINAFGCGVEAAYIVLYLVYAPRR
ARLRTLAFFLLLDVAAFALIVVTTLYLVPKPHQVKFLGSVCLAFSMAVFVAPLSIIFKVIKTKSVEFMPIGLSVCLTLSAVAWFCYGLFTKDPYVMYPNV
GGFFFSCVQMGLYFWYRKPRNTAVLPTTSDSMSPISAAAAATQRVIELPAGTHAFTILSVSPIPILGVHKVEVVAAEQAADGVAAAAAADKELLQNKPEV
IEITAAV |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
molecular_function |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| Presence of Splice variants |
No |
