LOC_Os08g41950

Expression Profile

RGAP LOCUS ID LOC_Os08g41950
RAP-DB ID Os08g0531700
Function OsMADS7 - MADS-box family gene with MIKCc type-box, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.486

3) NUCPRED Prediction
localization Nuclear
score 0.89

4) Y-Loc Prediction
localization Nuclear
score 99.25
confidence value 0.56
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category MIKC_MADS

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMADS7|OsMADS45
Function assigned as per literature
Subcellular localization as per literature Nucleus
Cells used for localization experiment  onion (Allium cepa) epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25096923
Reference of localization https://academic.oup.com/jxb/article/65/18/5339/2885030
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 7
Number of PAT7 0
Number of Bipartite 2
Basic residues % 0.184
NLS score 2.64
Protein Sequence >LOC_Os08g41950.1 protein
MAEKKKKKKKKKPQSLLVLTSWRSIGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCS
YAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRQYYKSKHRLCLVRSKVWNLVKIRDDVTEKLCMYERNLLGEDLDSLGIKELESLEKQLDSSLK
HVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGYPAEHHEAMNSAC
MNTYMPPWLP

GO Analysis
1
GO Category Biological Process
GO Term flower development
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES