LOC_Os08g41940

Expression Profile

RGAP LOCUS ID LOC_Os08g41940
RAP-DB ID Os08g0531600
Function OsSPL16 - SBP-box gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.271

3) NUCPRED Prediction
localization Non Nuclear
score 0.72

4) Y-Loc Prediction
localization Nuclear
score 99.92
confidence value 0.94
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category SBP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) qGW8|OsSPL16|GW8
Function assigned as per literature OsSPL16 controls grain size, shape and quality in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Tobacco leaf
NUCLEAR or Not Nuclear NUCLEAR
PMID 22729225
Reference of localization https://www.nature.com/articles/ng.2327#s1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 5
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.086
NLS score 2.01
Protein Sequence >LOC_Os08g41940.1 protein
MEWDLKMPPAASWELADELENSGGGGVPAAVSSSSAAVGGGVNAGGGGRQECSVDLKLGGLGEFGGGGAQPRVAVAGEPAKGKGPAAAATGAAAAASSAP
AKRPRGAAAAGQQQCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLQEFDEAKRSCRKRLDGHNRRRRKPQPDPMNSA
SYLASQQGARFSPFATPRPEASWTGMIKTEESPYYTHHQIPLGISSRQQHFVGSTSDGGRRFPFLQEGEISFGTGAGAGGVPMDQAAAAAAASVCQPLLK
TVAPPPPPHGGGGSGGGKMFSDGGLTQVLDSDCALSLLSAPANSTAIDVGGGRVVVQPTEHIPMAQPLISGLQFGGGGGSSAWFAARPHHQAATGAAATA
VVVSTAGFSCPVVESEQLNTVLSSNDNEMNYNGMFHVGGEGSSDGTSSSLPFSWQ

GO Analysis
1
GO Category Biological Process
GO Term flower development
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No