LOC_Os08g41880

Expression Profile

RGAP LOCUS ID LOC_Os08g41880
RAP-DB ID Os08g0531000
Function nucleotide pyrophosphatase/phosphodiesterase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Extracellular
score 1.791

3) NUCPRED Prediction
localization Non Nuclear
score 0.21

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.65
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) NPP1|OsPAP27b
Function assigned as per literature
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Green Cells of Transgenic Rice Plants 
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 17028208
Reference of localization http://www.plantcell.org/content/18/10/2582.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.095
NLS score -0.47
Protein Sequence >LOC_Os08g41880.1 protein
MVSRKRGGGGGVAMAVAMLLAAASASRPSSSLEGFQPLSKIAVHKATVDLHGSAFVSATPALLGDQGEDTEWVTVKYGWANPSADDWIAVFSPADFISGS
CPNPSRYPDEPLLCTAPIKYQFANYSANYVYWGKGSIRFQLINQRYDFSFALFTGGLENPKLVAVSEAISFKNPKAPVYPRLAQGKSYDEMTVTWTSGYD
ISEAYPFVEWGMVVAGAAAPTRTAAGTLTFNRGSMCGEPARTVGWRDPGFIHTAFLRDLWPNKEYYYKIGHELSDGSIVWGKQYTFRAPPFPGQNSLQRI
IVFGDMGKAERDGSNEFANYQPGSLNTTDRLVEDLDNYDIVFHIGDLPYANGYISQWDQFTAQVAPITAKKPYMIASGNHERDWPNTGGFFDVKDSGGEC
GVPAETMYYYPAENRANFWYKVDYGMFRFCIADSEHDWREGTDQYKFIEQCLSTVDRKHQPWLIFAAHRVLGYSSNWWYADQGSFEEPEGRESLQRLWQR
HRVDVAFFGHVHNYERTCPMYQSQCVSGERRRYSGTMNGTIFVVAGGGGSHLSDYTSAIPKWSVFRDRDFGFVKLTAFNHSSLLFEYKKSSDGKVYDSFT
VERDYRDVLSCVHDSCLPTTLAS

GO Analysis
1
GO Category Molecular Function
GO Term hydrolase activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No