| RGAP LOCUS ID |
LOC_Os08g41720 |
| RAP-DB ID |
Os08g0529000 |
| Function |
auxin efflux carrier component, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
plas |
| score |
5.5 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
4.434 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.01 |
4) Y-Loc
Prediction
|
| localization |
Secreted pathw |
| score |
|
| confidence value |
0.99 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsPIN5b |
| Function assigned as per literature |
OsPIN5b participates in auxin homeostasis, transport and distribution in vivo |
| Subcellular localization as per literature |
ER |
| Cells used for localization experiment |
rice protoplast |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
26213119 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.12939 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.062 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os08g41720.1 protein
MAPLYFALGLGYGSVRWWRFFTAEQCAAINTMVVYFSMPFFTFDFVVRTDPFAMNYRVIAADAVSKAIAIAAMAAWARTRCGCAAAKAGAQSWSITGFSL
AALNNTLVVGVPLLDAMYGRWAQDLVVQIAVVQSMVWFPLLLMAFELRKAWVVGGGGGVGPAVMSSSSPPEKQSDVEMNGAVVAAPGGGGGVRLPFWATA
RTVGLKLARNPNVYASVLGVVWACIAYRWHLSLPGIVTGSLQVMSRTGTGMSMFSMGLFMGQQERVIACGAGLTALGMALRFVAGPLATLVGAAALGLRG
DVLHLAIIQAALPQSIASFVFAKEYGLHADVLSTAVIFGTLISLPILIAYYAVLGFV |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
tropism |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
vacuole |
|
| Presence of Splice variants |
No |
