LOC_Os08g41380

Expression Profile

RGAP LOCUS ID LOC_Os08g41380
RAP-DB ID Os08g0525500
Function pentatricopeptide, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Mitochondrial
score 1.615

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.31
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RL1
Function assigned as per literature RL1-mediated nad4 splicing is crucial for embryo and endosperm development in ric
Subcellular localization as per literature Mitochondria
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31848048
Reference of localization https://www.sciencedirect.com/science/article/pii/S0006291X19322107?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.119
NLS score -0.47
Protein Sequence >LOC_Os08g41380.1 protein
MPPPAAAAALLRRVGLGLGAGAGVGVRGLATLPDAAQPQHPTSKDAYFAAVHHLSTVVRRDFYLERTLNRLRLPSPFPPDLALRVIRAAAPAEPLHAARF
LAWLRAKPSFAASADHFDALLLPLARARLFTHLWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSF
AGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALC
SSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVML
VKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRMEQLEMSMNGN

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No