LOC_Os08g40620

Expression Profile

RGAP LOCUS ID LOC_Os08g40620
RAP-DB ID Os08g0518100
Function rabGAP/TBC domain-containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 3.274

3) NUCPRED Prediction
localization Non Nuclear
score 0.74

4) Y-Loc Prediction
localization Nuclear
score 98.71
confidence value 0.47
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMAP
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.114
NLS score 0.27
Protein Sequence >LOC_Os08g40620.1 protein
MAEEGEERRRFSNLRGVRWRVDLGILPASPGASVDEHRRAAADSRRRYVSLRRRLLVDPHVPKEEGRSSNLIVDNPLSQNPDSSWGRFFRGAELEKTVDQ
DLSRLYPEDGSYFQTPTCQAMLRRILLMWCLQHPEHGYRQGMHELLAPLVYVLQVDIDKLSQVRKLHEDCFNDDFDGVPFPDTDMVFSYKPRKDPKWSFG
ADNQNDSERSSKSNTLDELDPDTKEIILLSDAYGAEGELGIVLSERFMEHDAYSMFDGLMDGGSGVVRMAEFFSPSSVGSSSNLPPVIEASSALFHLLSI
VEPTLHNHFIELKVEPQWFALRWLRVLFGREFCLNDLLVVWDKVFACSNNMLLSSDEEYNFRILCSDRGAFIAAMAVSMLLHIRSSLLATELDVFCLQRL
LNFPTNIDVQKLIEKANSLQSIAIDANTSSSSFLLKRDSYEFDRVHSNLSSSTPPRTPLHPVSESYWEEKWRNVHKDGTTPKEVERGNSFSKQLKKSLTQ
KLGLSRTESDPSPVKVLSVSSNDTRNSVRRCLLNTLSDDLDCSNELAGKTQEDEFPIISVHREHPLSSAEPSKLKAAGENVTVSASCVAKLSPLKKSVVE
PANENATQGTKCVPEACSSGENSPVFYAARASAGNEPLNGQDTDSESSSVTSNSFAGDHDRDEILKDEPSSSNDDNKTIQDSEAASSDKSPDRNGTSERA
VVSNERKPFISKFQWLLKLGRPSVEGNMEKSSGETSADKQDGDTSCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNMLENIQVIESAFQQDRGQPGP
VENFSNNILGGKGQVTAMAALTELRKISNLLSEM

GO Analysis
1
GO Category Molecular Function
GO Term enzyme regulator activity
2
GO Category Biological Process
GO Term signal transduction
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term catabolic process
Presence of Splice variants YES