LOC_Os08g40560

Expression Profile

RGAP LOCUS ID LOC_Os08g40560
RAP-DB ID Os08g0517300
Function ZOS8-11 - C2H2 zinc finger protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Nuclear
score 3.99

3) NUCPRED Prediction
localization Non Nuclear
score 0.68

4) Y-Loc Prediction
localization Nuclear
score 99.86
confidence value 0.65
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ZOS8-11
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 4
Number of Bipartite 1
Basic residues % 0.144
NLS score 2.2
Protein Sequence >LOC_Os08g40560.1 protein
MAEVARASASPPPASASTGGDRKRGRSSPSLPPPPPGPPPQVPHGSKRHRRDEGGGGGFDRRRLGPGVGYDNPDDRRYGNDHGGAGGRGGYGDERGQGRN
FNRAPDWTDSGRGGWNDGPANSRREGLMSYKQFMQELEDDVSPDEAQHRYEEYKSEYITTQKKAYFDLHKNDDWLKNKYHPTNLEIVMERRNELARTAAN
QFLQDLQNGSLDIGPGLTSSATNKSGNSVDDTDANGKKGKLGKSQDDLYYAAPKAHPVSSEPRRIRIDVELAQALICKLDSEKGIENNVLSGSDHDRAEK
DKSHGSMGPIVIIRGSSAVKGLEGAELLDTLVTYLWRIHGVDYYGMSETNEPKGLRHVKADSRTFNGASSNAAEWEKKLDSFWQDRIQGQDPMEILKAKD
KIDAAASEVLDPHVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVQKHLKLKHADLVRELTSKVRENIYFDNYMSDPKAPGGMPIMQQPAPREKVRQRPPIE
SRLRDERGNRRFDRNDSPTHDGSSDNPDDAYDSYGDPVMHGAFPPDIPAPPVLMPVPGAGPLGPFIPAPPEVAMRMMRDQGGPPPFEPTGGPRPRRPGRG
GLPMGGPSPILAAPLPPPHMHDPRKIRSYQDLDAPEDEVTVMDYRSL

GO Analysis
1
GO Category Biological Process
GO Term multicellular organismal development
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
6
GO Category Cellular comBiological Processonent
GO Term nucleolus
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Cellular comBiological Processonent
GO Term cytosol
9
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
10
GO Category Cellular comBiological Processonent
GO Term plastid
11
GO Category Biological Process
GO Term cellular component organization
12
GO Category Biological Process
GO Term cellular process
13
GO Category Cellular comBiological Processonent
GO Term nucleoplasm
14
GO Category Cellular comBiological Processonent
GO Term nucleus
Presence of Splice variants YES