| RGAP LOCUS ID |
LOC_Os08g39840 |
| RAP-DB ID |
Os08g0508800 |
| Function |
lipoxygenase, chloroplast precursor, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
12 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
3.896 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.38 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.17 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsHI-LOX|OsLOX9 |
| Function assigned as per literature |
OsHI‐LOX is involved in herbivore‐induced JA biosynthesis and plays contrasting roles in controlling rice resistance to chewing and phloem‐feeding herbivores |
| Subcellular localization as per literature |
Chloroplasts |
| Cells used for localization experiment |
Nicotiana tabacum leaves |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
19656341 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2009.03988.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
2 |
| Number of Bipartite |
0 |
| Basic residues % |
0.117 |
| NLS score |
0.22 |
| Protein Sequence |
>LOC_Os08g39840.1 protein
MLRPQLNPSSHTTTTSSSSSTQLFASSSCIASLRRPSSSSSSVVAAARRTRGQGSSRVVVVCASSSATASRGDSSSDMAAAAAVRVKAVATIKVTVGELI
NRSIDIRDLIGRSLSLELVSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMFLEDINLTASDGAGNSTVLPIRC
NSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRKNDLQQKRGDGTGEREADDRVYDYDVYNDLGNPDSNGDLARPVLGGNKQFPYPRRCRTGRP
PSKKDPKSETRKGNVYVPRDEEFSPEKEDYFLRKTVGSVLQAAVPAAQSLLLDKLKWNLPFPSFFVIDKLFEDGVELPGVDKLNFLESVVPRLLEHLRDT
PAEKILRFETPANIQKDKFAWLRDEEFARETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPY
VHKIRSLDHTTMYGSRTVFFLTDDGTLQLLAIELTRPASPSQPQWRQVFTPSTDATMSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQL
SEMHPIYQLLRPHFRYTMRINARARSALISAGGIIERSFSPQKYSMELSSVAYDKLWRFDTEALPADLVRRGMAEEDPTAEHGLKLAIEDYPFANDGLLI
WDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPV
EEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGIL
PYQLMKPFSDSGVTGMGIPNSTSI |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 12 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 13 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 14 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| Presence of Splice variants |
No |
