LOC_Os08g39630

Expression Profile

RGAP LOCUS ID LOC_Os08g39630
RAP-DB ID Os08g0506700
Function helix-loop-helix DNA-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 4.054

3) NUCPRED Prediction
localization Non Nuclear
score 0.59

4) Y-Loc Prediction
localization Nuclear
score 99.04
confidence value 0.36
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFBH1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.095
NLS score 0.02
Protein Sequence >LOC_Os08g39630.1 protein
MYGSPVSKDLNLPVQPPAMSSSGLLRYRSAPSTLLAEFCDDFLPPAAAPRAASPDADNVFSRFLADHQIRDKSPPATAAAAAAAAHFPDDPTMATQHHHQ
QQMMFQHHPQQMASVEGLYRTVSSTGIDAATAAANAAGGGGGGLLRQSSSPAGFLNHLNMDNGYGSMLRAGMAAAGGGVGFRNGANAAAAADSPGGSGGR
LKGQLSFSSRQGSLMSQISEMDSEELGGSSPEGAGGGGGGGGRGYLSGYPMSSGWEESSLMSDTNISGVKRQRDSSEPSQNGGGGGGLAHQFSLPKTSSE
MAAIEKFLQFQDAVPCKIRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANCTCSAKHQQYSG

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No