LOC_Os08g39080

Expression Profile

RGAP LOCUS ID LOC_Os08g39080
RAP-DB ID Os08g0500100
Function tetratricopeptide repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Nuclear
score 2.166

3) NUCPRED Prediction
localization Non Nuclear
score 0.38

4) Y-Loc Prediction
localization Cytoplasm
score 86
confidence value 0.1
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPEX5
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.072
NLS score -0.47
Protein Sequence >LOC_Os08g39080.1 protein
MAMRHLITGQGNCAPDGASSSNPFGNLANAIFGQSSKAQSIKELPGSAVNVPTTSELGTAAPLSTIPGSENEFKQDQLPLARGADFIRGGPSHDWVESFR
PPGLPEFAVPDAQLKEFEQIFNSTGPTFGPPVMDGPPQRVLSGVLRSFLASGQAGVPFQPVPVPALGLSESDKQCIRDRSCIMARHILADQPEEYIQAQV
NTLLHSLDIDSNYRMKGPMHGPYPEMEEYWNQSQSAMRSGPMHNAADKWITEFGKQNNNPEEWAHSFEQQYGSNGWASEFEQHQSQMAMTGGMNMANLAA
MEQSRMLAQTLASNNDPKFQNSKFFQFVSKMSRGELIIEDNQVKQGSASQSSGWADEFQTQYNANANSWADQFVHEEMSQGADKWASEFSTEYNQGGLNE
NWIDEFSKMRVDDEWAEEFSGGTFGESSADPWVDEFQNQLSASKQNSGASRGVYVFSDMNPYVGHPNPMQEGQELFRKGLLSEAVLALEAEVLKNPDNAE
GWRLLGVTHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQGEALRYLHRWLQNHPKYGGIAPPQPTDSPYGPDVIRLFNEAAQMSPEDADV
HIVLGVLYNLSREYDKAIAAFKTALQLKPQDYSLWNKLGATQANSIQSADAILAYQQALDLKPNYVRAWANMGISYANQGLYEDSIRYYVRAVAMNPKAD
NAWQYLRISLSNASRADMIAACDSRNLDVLQKEFPL

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Cellular comBiological Processonent
GO Term cytosol
5
GO Category Biological Process
GO Term transport
6
GO Category Biological Process
GO Term cellular component organization
7
GO Category Biological Process
GO Term cellular process
8
GO Category Cellular comBiological Processonent
GO Term membrane
9
GO Category Cellular comBiological Processonent
GO Term peroxisome
Presence of Splice variants YES