| RGAP LOCUS ID |
LOC_Os08g39070 |
| RAP-DB ID |
Os08g0500000 |
| Function |
COP9 signalosome complex subunit 6a, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Mitochondrial |
| score |
1.564 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.1 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.54 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
CSN6 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
NA |
| Cells used for localization experiment |
|
| NUCLEAR or Not Nuclear |
|
| PMID |
|
| Reference of localization |
|
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.091 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os08g39070.1 protein
MSAPSDPAVATHPQAGAAAAASSSSGLTFKLHPLVIVNVSDHHTRVKAQAACSGDGASSAAAGGQPPRVFGCVIGVQRGRTVEIFNSFELVLDPVSGTLD
RAFLEKKQELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSPQLIFVRANYTIETVEAERIS
VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQYLVSMQKGDMPLDNSLLRQVSSLVRRLPAMESEKFQDDFLMEYNDTLLMTYLAMFTNC
SSTMNELVEKFNATYERSTARRGGRGAFM |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
protein metabolic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| Presence of Splice variants |
No |
