LOC_Os08g38880

Expression Profile

RGAP LOCUS ID LOC_Os08g38880
RAP-DB ID Os08g0497600
Function WD-40 repeat family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 2.171

3) NUCPRED Prediction
localization Non Nuclear
score 0.27

4) Y-Loc Prediction
localization Nuclear
score 76.96
confidence value 0.83
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SRWD1
Function assigned as per literature SRWD1 participates in the development and immune response of rice
Subcellular localization as per literature Nucleus and plasma membrane
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID not available
Reference of localization https://www.sciencedirect.com/science/article/pii/S2095927317306199
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.116
NLS score -0.47
Protein Sequence >LOC_Os08g38880.1 protein
MSRRSGYRAAEQEDRQVDLMGDSDFDDDEYGQPIESKEDTSAVDVKKGKDIQGIPWDNLSFSRDRYRKTRMVQYANFENVPNSGKNSEKVCTPVDKGALY
YEFQYNTRSVKPTILHFQLRNLVWATTRHDVYLLSQRSVLHWSPFASEKHKVIDLQGHITPSEKHQGNVSEGFYQAQVSTLAVRGNLLVAGGFRGELICK
FLDREGISYCCKSTHDDNGITNSLEIFEKPSGSVHFLASNNDCGVRDFDMEKFQICNNFRFPWAVNHTSLSPDGKLVAIVGDNPEGLIVDTNSGKTVHEL
RGHLDYSFASAWNPDGRTFATGNQDKTCRIWDIRNLSKSVAVLGGNMGAIRSIRYTSDGRFLAMAEPADFVHIFDVGSGYRRKQVVDFFGEISGISFSPD
TEALFIGVHDRTYSSLLQYNRLRFYSYLDSAI

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Molecular Function
GO Term molecular_function
3
GO Category Cellular comBiological Processonent
GO Term plasma membrane
4
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES