| RGAP LOCUS ID |
LOC_Os08g38780 |
| RAP-DB ID |
Os08g0496500 |
| Function |
core histone H2A/H2B/H3/H4, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.955 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.28 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.28 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
CCAAT/NF_YC |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsHAP5D |
| Function assigned as per literature |
OsHAP5C/D interact with DHD1 to delay heading date by inhibiting expression of Ehd1 |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice protoplasts cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
30107076 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/epdf/10.1111/pbi.12996 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.083 |
| NLS score |
-0.22 |
| Protein Sequence |
>LOC_Os08g38780.1 protein
MEPKSTTPPPPPPPPVLGAPVPYPPAGAYPPPVGPYAHAPPLYAPPPPAAAAASAAATAASQQAAAAQLQNFWAEQYREIEHTTDFKNHNLPLARIKKIM
KADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEAKDAEAAAAVAAGIPHPAAGLPATDPMAYY
YVQPQ |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleoplasm |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| Presence of Splice variants |
No |
