LOC_Os08g38410

Expression Profile

RGAP LOCUS ID LOC_Os08g38410
RAP-DB ID Os08g0492100
Function RNA recognition motif containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9.5

2) CELLO Prediction
localization Nuclear
score 2.535

3) NUCPRED Prediction
localization Non Nuclear
score 0.47

4) Y-Loc Prediction
localization Nuclear
score 99.93
confidence value 0.97
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRBGD3
Function assigned as per literature OsRBGD3 has role in cold stress tolerance
Subcellular localization as per literature cytoplasm and nucleus 
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 30940336
Reference of localization https://pdfs.semanticscholar.org/ce8c/d25ae417f5309dc18b4c42d9883ac0d2d4fd.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 5
Number of PAT7 3
Number of Bipartite 0
Basic residues % 0.14
NLS score 1.63
Protein Sequence >LOC_Os08g38410.1 protein
MGKAEARSREHGGGGGGGSGSAGKIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDDIHEFNGKQVEIKRTIPK
DSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKLIDANGLLCSLHRAAGGAD
PGRRGATSQGAVVVHLQPPPVDAIDAPRLQHGVREDPHEGHAGVQPGGQHVVVPRPPPLVPAVHDVVEGEPHGAPHEVVHRPRRRHHPRGAEEHRHVDEP
DPRPARERPRQRPHRHRRQRAGEEEVVHLGVQAEAAEHPQRADHPPDDGGVEEDVVAGARPRAPLRQLRRVADVAHALQQPPRRPEVHRRRQHRPDELHE
QNRANSLTFSSDESMSGFSRWGLTWTMNMERGGIFM

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term RNA binding
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Biological Process
GO Term biological_process
5
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants YES