| RGAP LOCUS ID |
LOC_Os08g37800 |
| RAP-DB ID |
Os08g0484600 |
| Function |
CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
2.472 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.22 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
96 |
| confidence value |
0.59 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
SnRK1B|OsK4 |
| Function assigned as per literature |
OsK4 controls photoperiodic flowering |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Arabidopsis protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
26954091 |
| Reference of localization |
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005927 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.132 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os08g37800.1 protein
MEGNARGGGHSEALKNYNLGRTLGIGSFGKVKIAEHKLTGHRVAIKILNRRQMRNMEMEEKAKREIKILRLFIHPHIIRLYEVIYTPTDIYVVMEYCKFG
ELFDYIVEKGRLQEDEARRIFQQIISGVEYCHRNMVVHRDLKPENLLLDSKYNVKLADFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWS
CGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSALARDLIPRMLVVDPMKRITIREIREHQWFQIRLPRYLAVPPPDTAQQAKMIDEDTLQDVV
NLGYEKDHVCESLRNRLQNEATVAYYLLLDNRFRATSGYLGADYQESLERNLNRFASSESASSNTRHYLPGSSDPHASGLRPHYPVERKWALGLQSRAQP
REIMIEVLKALEDLNVCWKKNGQYNMKCRWSVGYPQATDMLDVNHSFVDDSIIMDNGDVNGRLPAVIKFEIQLYKSRDEKYLLDMQRVTGPQLLFLDFCA
AFLTKLRVL |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
response to extracellular stimulus |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
kinase activity |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| Presence of Splice variants |
No |
