LOC_Os08g34790

Expression Profile

RGAP LOCUS ID LOC_Os08g34790
RAP-DB ID Os08g0448000
Function AMP-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6.5

2) CELLO Prediction
localization Cytoplasmic
score 1.39

3) NUCPRED Prediction
localization Non Nuclear
score 0.04

4) Y-Loc Prediction
localization Cytoplasm
score 85
confidence value 0.59
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Os4CL5
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.47
Protein Sequence >LOC_Os08g34790.1 protein
MGSLPEQFVFRSRLPDIAIPDHLPLHDYVFERLADRRDRACLIDGATGETLSFGDVDALSRRVAAGLSSIGVCHGSTVMLLLPNSVEFAVAFLASSRLGA
VTTTANPLHTPPEIAKQVAASGATVVVTEPAFVAKVSGLAGVTVVATGGGAERCASFAGLAAADGSALPEVAIDVANDAVALPYSSGTTGLPKGVMLSHR
GLVTSVAQLVDGENPNLHLREDDVVLCVLPMFHVYSLHSILLCGMRAGAAIVVMKRFDTVKMLQLVERHGVTIAPLVPPIVVEMAKSDALDRHDLSSIRM
VISGAAPMGKELQDIVHAKLPNAVLGQGYGMTEAGPVLSMCMAFAKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQPGEICIRGKQIMKGYLNNPE
ATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHAAVADAAVVPMKDDSCGEIPVAFVVARDGSGITDDEIKQYVAKQV
VFYKRLHKIFFVDAIPKAPSGKILRKDLRAKLAAGIPAC

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Molecular Function
GO Term catalytic activity
4
GO Category Biological Process
GO Term response to biotic stimulus
5
GO Category Biological Process
GO Term metabolic process
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Biological Process
GO Term cellular process
8
GO Category Biological Process
GO Term secondary metabolic process
Presence of Splice variants No