LOC_Os08g34380

Expression Profile

RGAP LOCUS ID LOC_Os08g34380
RAP-DB ID Os08g0442700
Function receptor-like kinase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization vacu
score 3

2) CELLO Prediction
localization Chloroplast
score 1.255

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.09
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) COE1
Function assigned as per literature COE1 is responsible for commissural vein pattern formation in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 20487383
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2010.04250.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score 0.53
Protein Sequence >LOC_Os08g34380.1 protein
MASNLFLLLFFLVVSYAPFLAFSSEPLNPEVEALIAIRQGLVDPHGVLNNWDEDSVDPCSWAMVTCSAHNLVIGLGAPSQGLSGTLSGRIANLTNLEQVL
LQNNNITGRLPPELGALPRLQTLDLSNNRFSGRVPDTLGRLSTLRYLRLNNNSLSGAFPSSLAKIPQLSFLDLSYNNLTGPVPHFPTRTFNVVGNPMICG
SSSGSHAGNANAAECATVVAPVTVPFPLDSTPSSSSRAAAAAVGRSKGGGGAARLPIGVGTSLGASALVLLAVSCFLWRRRRRHRCLLSGPSSVLGILEK
GRDVEDGGGGEVMARLGNVRQFGLRELHAATDGFSARNILGKGGFGDVYRGRLSDGTVVAVKRLKDPTASGEAQFRTEVEMISLAVHRHLLRLVGFCAAA
SGERLLVYPYMPNGSVASRLRGKPPLDWQTRKRIAVGTARGLLYLHEQCDPKIIHRDVKAANVLLDECHEAVVGDFGLAKLLDHGDSHVTTAVRGTVGHI
APEYLSTGQSSEKTDVFGFGILLLELVTGQRALEVGKGSGVIQHQKGVMLDWVRKVHQEKLHDLLVDQDLGPHYDRIEVAEMVQVALLCTQFQPSHRPRM
SEVVRMLEGDGLAEKWEANHRPAAMAAAAAPHELGYDHRNDSNGSVFFNDFHDNDSSLSSDEVRSIDMVEEMELSGPR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Molecular Function
GO Term kinase activity
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Biological Process
GO Term protein modification process
Presence of Splice variants YES