LOC_Os08g32690

Expression Profile

RGAP LOCUS ID LOC_Os08g32690
RAP-DB ID Os08g0422600
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.234

3) NUCPRED Prediction
localization Nuclear
score 0.82

4) Y-Loc Prediction
localization Nuclear
score 99.87
confidence value 0.84
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SAD1
Function assigned as per literature SAD1 physically interacts with OsMED4 and control various aspects of plant development
Subcellular localization as per literature SAD1 was localized with OsMED4 in Nucleus
Cells used for localization experiment Leaves of Nicotiana benthamiana
NUCLEAR or Not Nuclear NUCLEAR
PMID 25404280
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/tpj.12725
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.139
NLS score -0.22
Protein Sequence >LOC_Os08g32690.1 protein
MASASPRVSYDASYEPGPAFEENSEEAMLDISQTESTELWLIQWPLNQLDASDFHGQEVTLKLHRDGKLSSLDSSSGKSYDLVSFAAQQPDATVFLPSGP
EAKAVGKIARRVSLVRYPDPEEPEKPGLGSLTPSSKKSAGSSKKTRSRFSSGSKNRSSQGSALSLGQQSAEPAHKHNQKRKDESSLGHSNVSGKSAEGSQ
VRGGDSGTTLEVPQTPGEKSKKKNKKVRIAE

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term nucleolus
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No