| RGAP LOCUS ID |
LOC_Os08g29110 |
| RAP-DB ID |
Os08g0378900 |
| Function |
thioredoxin, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
4.336 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.03 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.76 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsTRXZ |
| Function assigned as per literature |
OsTRXZ interacts with TSV |
| Subcellular localization as per literature |
OsTRXZ colocalize with TSV in chloroplasts |
| Cells used for localization experiment |
leaf cells of N. benthamiana |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
28248438 |
| Reference of localization |
https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.14482 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.111 |
| NLS score |
0.02 |
| Protein Sequence |
>LOC_Os08g29110.1 protein
MAMAAAASLLPASAAPTLPGRAFRPPRNSTPTASLSCDGGSRCRGVGLGVILGGCRAQGVRRNAAAETYVPGSGKYIAPDYLVKKVTAKELEELVRGERK
VPLIVDFYATWCGPCVLMAQDIEMLAVEYENNALFVKVDTDDEYELARDMQVRGLPTLYFFSPDQSKDALRTEGLIPIDMIRNIIDNEL |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular homeostasis |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
