LOC_Os08g27170

Expression Profile

RGAP LOCUS ID LOC_Os08g27170
RAP-DB ID Os08g0360300
Function calmodulin binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 3.187

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.97
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSARD1
Function assigned as per literature OsSARD1 plays an important role in the regulation of the defense responses to GR and IB irradiation and exhibits phytohormone induced expression
Subcellular localization as per literature Nucleus
Cells used for localization experiment Nicotiana benthamiana protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 28299960
Reference of localization https://www.tandfonline.com/doi/full/10.1080/09553002.2017.1297901?scroll=top&needAccess=true
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.112
NLS score -0.22
Protein Sequence >LOC_Os08g27170.1 protein
MSVRRPRVEEEVDDDDQDGSSGSAEEHQQRRHGARRLRPVLSFRSVVRRAVAAETIQQIVLNLEPVIRRVVREEIRNIFPQYGHDLPHRSLPLQIQDVGV
SPPLKLVFTKQLKLPIFTNNKLVDIDNNPIEIQLVDTRTNLIVTPSNTHLGYSAIKLEVLVLDGDFRYDEDGARWTDDQFSTAIVKAREGRRPLLVGTVS
VTMSNHGVAVIDDVSFTDNSSWIRSRKFRIGVRVVMLTDSCGLRIQEAVSESFTVKDHRGELYKKHFPPLLTDNVWRLRNIGKDGPIDKRLEAEGIKNVQ
DFLKLNTMNPNKLKSLVGMSDRQWSATLKQAKSCDMGGKCYVFKSEGCEIKFNPVGEILAVRFGGRMCSLHELLPHQMVQIKQLVSQAYQQWDQMEEVQN
EMALVDKSLIPFHDEKPMISSGMPSYINQAEGLMENSGWEPSEMSQESMISSASQNAMYVDSLGTATTSTAEMVTNNISTLEPASTVPDSALYSWNSGMA
ADDHFSWQNNTNLVPWDHAN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to biotic stimulus
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term DNA binding
8
GO Category Molecular Function
GO Term protein binding
9
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No