LOC_Os08g25570

Expression Profile

RGAP LOCUS ID LOC_Os08g25570
RAP-DB ID Os08g0344100
Function histone deacetylase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cysk
score 10

2) CELLO Prediction
localization Nuclear
score 1.872

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Nuclear
score 88.48
confidence value 0.44
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) HDA705
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.16
Protein Sequence >LOC_Os08g25570.1 protein
MAASGEGASLASAAGGEDGRRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGLHRLLELSRPYPASDADIRRFHSDDYVAFLASATGNPALLD
ARAVKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAILELLKFHRRVLYVDIDVHHGDGVEEAF
FTTNRVMTCSFHKYGDFFPGTGHITDVGAGEGKHYALNVPLSDGIDDDTFRDLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRY
LRSFNIPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYNLHIQPRSVENLNSTKDLENIKSMILDHLSKIEHVPSTQFHDRPSD
PEAPEQEEEDMDKRPPQRSRLWSGGAYESDTEDPDNMKTETNDLSASSVMKDESNDDS

GO Analysis
1
GO Category Molecular Function
GO Term hydrolase activity
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term reproduction
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Biological Process
GO Term response to endogenous stimulus
8
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Biological Process
GO Term response to stress
11
GO Category Biological Process
GO Term response to abiotic stimulus
12
GO Category Cellular comBiological Processonent
GO Term plastid
13
GO Category Biological Process
GO Term cellular component organization
14
GO Category Biological Process
GO Term protein modification process
15
GO Category Biological Process
GO Term embryo development
Presence of Splice variants No