LOC_Os08g23440

Expression Profile

RGAP LOCUS ID LOC_Os08g23440
RAP-DB ID Os08g0323700
Function amino acid permease family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 13

2) CELLO Prediction
localization PlasmaMembrane
score 4.785

3) NUCPRED Prediction
localization Non Nuclear
score 0.07

4) Y-Loc Prediction
localization Cytoplasm
score 80
confidence value 0.54
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCCC1
Function assigned as per literature OsCCC1 plays a significant role in K+ and Cl− homeostasis and rice plant development
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Onion epidermal cells and rice root cells
NUCLEAR or Not Nuclear Not NUCLEAR
PMID 21369877
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-011-9744-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.079
NLS score -0.22
Protein Sequence >LOC_Os08g23440.1 protein
MENGEIEGAADDGVPVPAPPNGRRYRPVGSSDRAVIQMTSMEPGSSSSTAVAAVSGITPQPPRNLTVDPSMQEDHTVSQGDSKLELFGFDSLVNILGLKS
MTGEQIQAPSSPRDGEDVAITIGRPKETGPKFGTMMGVFVPCLQNILGIIYYIRFTWIVGMAGVWQSLVLVSFCGACTFLTGISLSAIATNGAMKGGGPY
YLIGRALGPEVGVSIGLCFFLGNAVAGSMYVLGAVETFLDAVPSAGFFKESVTVVNNTLVNGTATASTATISTPSLHDLQVYGVIVTILLCFIVFGGVKI
INKVAPAFLIPVLFSLLCIYLGVFIAPRHNAPKGITGLSITTFKDNWGSEYQRTNNAGVPDPNGSIYWDFNALVGLFFPAVTGIMAGSNRSASLKDTQRS
IPIGTLSATLTTTAMYLFSVLLFGALATREELLTDRLLTATVAWPAPAVIYIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVSEGAEPHSAT
LFTAFICICCVVIGNLDLITPTITMFFLLCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCVVIMFLISWSFTVVSLALASLIYYYVSLKGKA
GDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSIIDGDYHELAEDAKTACRQLDTYIE
YKRCEGVAEIIVAPSMSEGFRSIVQTMGLGNLKPNIIVMRYPEIWRRENLIQIPSTFVSIINDCIIANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDG
GLMLLLSQLLLTKETFESCKIQVFCIAEEDTDAEELKADVKKFLYDLRMHAEVIVVTMKSWEPHMESSSSGAPQDDSQEAYTSAQRRISTYLSEMKETAQ
REGHPLMEDGKQVVVNEQKIEKFLYTMFKLNSTILRYSRMAAVVLVSLPPPPLNHPAYFYMEYMDLLVENVPRMLIVRGYRRDVVTFFT

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No