LOC_Os08g19590

Expression Profile

RGAP LOCUS ID LOC_Os08g19590
RAP-DB ID Os08g0292000
Function Homeobox domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 1.99

3) NUCPRED Prediction
localization Non Nuclear
score 0.66

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category HB/HD-ZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTF1L
Function assigned as per literature OsTF1L has role in enhancing drought tolerance through lignin biosynthesis and stomatal closure in rice.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29781573
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/pbi.12951
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.102
NLS score 0.28
Protein Sequence >LOC_Os08g19590.1 protein
MNGELKLMASYVSKLKFILQKDQQQEPHTANLLVLLGSSNQDKRNGLSQGENRMDTCTRKKPRRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNM
TETQIKYWFQNCRTKMKKFKNNEERKLLQKENEELKKENAELRNRMKNSTCRACDLPLFHIDCRHWENPMLNKGNHGVTSNLIPQAVSSLLPSSSGFVAS
GSNLSSNAVLMPVSAMPSSVLQPAPAVSGANFPILHNLSANANDGYTEKNVLLDLANRAMEEFFSLMKENESLLVKKKENGPLWLPHMDILGVESLNYQE
YLAKSRTIGQKPVDFKVVVTRDTAIVNGSCVDLVKSLLDANRWRELFPGIVASANTTKIISTGPSNLHDGLLQLMRAELQVMSPEVPVCDVTFLRQSVQF
GSGLWCVVDVSIDTILPGESKTAQSSVQTSSTAARRMEVRLLPSGCVIEEMENGYSKVTWMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHSQF
LSGLHKYIFCPDSTMTEVVMRRKVLYLVKQMTSSFTGLFASMSKATLQDGDDTHFAHQIVGGATGEPAGLLLSATTTIWLPGVNPRHVYDHLRDEQCHGE
WRCLLGEQLHQGNALPYGAPLNGETVPEFYRMVNGLHEGHAISLISPREMGGNISNTLLLQEARTDLSGSLIVYARTDVNTVHSIMNSGLNPATVFLVSS
GCAILPDCLESFPLHPAATADQAGTSSAAIASRSETGGSFVTVTYQMFFSSQGGAAPASSSIHQGRDALKKATDIFKVVLDTLTVA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term anatomical structure morphogenesis
3
GO Category Biological Process
GO Term cell differentiation
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Biological Process
GO Term response to external stimulus
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Biological Process
GO Term biosynthetic process
8
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
9
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES