LOC_Os08g19320

Expression Profile

RGAP LOCUS ID LOC_Os08g19320
RAP-DB ID Os08g0290100
Function aberrant root formation protein 4, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Golgi
score 1.765

3) NUCPRED Prediction
localization Non Nuclear
score 0.38

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.02
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Vsl1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.091
NLS score -0.47
Protein Sequence >LOC_Os08g19320.1 protein
MGLVSTEATPHHHARLRRRSMDAGDTSAAAAVAPTPARLREALAALSKAFESGDCSDGSAAAAVSDLLNAAADAADAEADAEDEAAAGVVEEMLREVHAF
LSSPSSNQLAIDALSLELVKPVAKLGALMRNCWDIANAIIEFFVSNCNPRDMLSILCEAVDAPLASNGSVYFVLLFKELAKVLVLIQRRHTEQVKVTLPA
VLRVMNAVIPECDEEHGKIIVDMYNAALRIGNAIQEMCKKMVNQTNEELCSVLSLYSLQNIALVSRCKQQHILSACGSVVLQHSKILTFCGFTYLGLLTG
NDVTSATDKISKDEDADLLECFSFAMNGANLAVIWTYMDDEISKYAGAELESALKDVKGNHTRMWQAINILRYVLSSTHYPWVIKSHSLDLLLTIANESR
IEEINDHVDVSSSGPQIFATLKAIESVMISAPDALMRKKAFATLKQVISMVPSSQRFNILQALIKNSIFPSLTALLLDLVKDEVSREIRRADQDIVESDQ
LQDGGEWPPPWFSHALELVELILKPPEGGPPCLPDHGEQVLSALNLLRFVLIIDSRGSRSRKMFGEETMRKVYSEWLMPLRPIVAGIQSESEEDGSDVAN
HIMCSLNPVQLVLYRCIELAEEKMKGF

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Cellular comBiological Processonent
GO Term cytosol
3
GO Category Biological Process
GO Term anatomical structure morphogenesis
4
GO Category Biological Process
GO Term post-embryonic development
5
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants YES