LOC_Os08g17680

Expression Profile

RGAP LOCUS ID LOC_Os08g17680
RAP-DB ID Os08g0278900
Function stromal cell-derived factor 2-like protein precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization extr
score 4

2) CELLO Prediction
localization Extracellular
score 2.85

3) NUCPRED Prediction
localization Non Nuclear
score 0.24

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.95
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSDF2-1
Function assigned as per literature OsSDF2-1 is essential for XA21-mediated immunity in rice
Subcellular localization as per literature ER
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 23849113
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945213001118?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.101
NLS score -0.47
Protein Sequence >LOC_Os08g17680.1 protein
MAAASFAIALLLYLGLDLPEASPAQSYAADPDNVVEITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTSFPNVDDSNSYWIVRPQPDTSAKQGDPIT
HGTVVRLQHMRTRKWLHSHMHASPITGNLEVSCFGGENESDTGDYWRLEIEGSGKSWRQNQKIRLRHVDTGGYLHSHDRKYTRIAGGQQEVCGVGDKRPD
NVWLAAEGVYLPVNQQK

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to biotic stimulus
3
GO Category Molecular Function
GO Term molecular_function
4
GO Category Cellular comBiological Processonent
GO Term membrane
5
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
Presence of Splice variants No