LOC_Os08g16610

Expression Profile

RGAP LOCUS ID LOC_Os08g16610
RAP-DB ID Os08g0266700
Function Rad21 / Rec8 like protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization Nuclear
score 3.998

3) NUCPRED Prediction
localization Nuclear
score 0.92

4) Y-Loc Prediction
localization Nuclear
score 98.89
confidence value 0.39
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRAD21-3
Function assigned as per literature OsRAD21-3 is required for pollen development in Oryza sativa
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 17617177
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-313X.2007.03190.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.087
NLS score 0.78
Protein Sequence >LOC_Os08g16610.1 protein
MFYSHTILARKSPLGTVWIAAHLERKIKKPQIDGIDIPSYAEFIMFPEVPIALRLSGHLLLGLVRIYSWKVNYLFHDCNRMLSTIRTAFASVQVDLPLHA
DHAPFDTITLPDTFRLDDINLDDAIRLIDTPDNHRKSLDQITLAEGDYLMIDLDEDARVELSAPGQSSHMGPEPTDEERLPPFHIDFGPSDNMDEEISVD
PSQGNNSEAVNTSNINQADKAPDLPEIMREAPFEGPELNLPDIDEVNNDPMDVTEESSPFVSKNITPPALERTISPGQGGLSGTSIPNARGSTSTTYDNI
EDVIPMDIGMPDFRIEPSPPRVQDEMNAQPVQGEINAQPVQDEMNAQPVQDEMNAHPAQDKRRIRYDNEIVFSNAYMKRQIDGGELHRLVSKRRKLPQAA
VDVWKFNRIRQKDGFLLDPLVHGMCATLRQTYERTFPHVIDPEAESGSVEHTPGVANDSIQDTHDHQLSPKSPGNTDAQPEHQFNQQAPRNSDGQPEPEL
NPKSPVNAEAQPESQINPQSPRNADGQPEPELNPKSPGEAGTSHFDDMPEIPRFSPQNIPSPIRDDNSPFKTPGAGGTPKSRLGETPASGTPADMSYMSP
GQDSDPQVSPFPFNDELDGDLPEIPSLMSTPGVISTAGTGTTGLGSMSARTRAVAQYFKDQMASATSDDQPGKFILNRILEGRHRKQAARMFFETLVLKS
YDYIDVEQEAAYGDIAVSVKPSLSGAKF

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Cellular comBiological Processonent
GO Term nucleolus
5
GO Category Biological Process
GO Term cellular component organization
6
GO Category Biological Process
GO Term cell cycle
Presence of Splice variants No