| RGAP LOCUS ID |
LOC_Os08g12840 |
| RAP-DB ID |
Os08g0225000 |
| Function |
FabA-like domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
11 |
2) CELLO
Prediction
|
| localization |
Mitochondrial |
| score |
1.541 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.27 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
7 |
| confidence value |
0.26 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
ZL16 |
| Function assigned as per literature |
ZL16 Encodes a β-Hydroxyacyl-ACP Dehydratase in Rice. |
| Subcellular localization as per literature |
Chloroplasts |
| Cells used for localization experiment |
rice protoplast cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
29946330 |
| Reference of localization |
https://www.frontiersin.org/articles/10.3389/fpls.2018.00782/full |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.108 |
| NLS score |
-0.04 |
| Protein Sequence |
>LOC_Os08g12840.1 protein
MEATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLVARRAAGDGQAVEAQEALPIEKRFPPFPSVMDINQIREILPHRFPFLLVDRVIEYKGG
EYAVGIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEIGGSRDNFFFAGIDKVRFRKPVIAGDTLIMRMTLTKYQKRFGLAKMEGKAYVG
GDLVCEGEFLLRKEHDEVANNGLSIFLDPKRLKLQDGEIPNTMEEEKPSAGVQPDPTVPTMALSWMLPTQGQETIHDTMNTAYEMSSSETPPLRADQAAA
AAPMDVEVQLRQRQPQAPPCQQAHFWSVSNDEDMWAGYWKYLASEISICFF |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell wall |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
No |
