LOC_Os08g09940

Expression Profile

RGAP LOCUS ID LOC_Os08g09940
RAP-DB ID Os08g0199300
Function GTP-binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cysk
score 5

2) CELLO Prediction
localization Cytoplasmic
score 4.394

3) NUCPRED Prediction
localization Non Nuclear
score 0.18

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.59
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsYchF1
Function assigned as per literature OsYchF1 and OsGAP1 are involved in plant defense response
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Leaf samples of 8-week-old rice plants 
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 20876569
Reference of localization http://www.jbc.org/content/285/48/37359.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.14
NLS score -0.47
Protein Sequence >LOC_Os08g09940.1 protein
MPPKASKKDAAPAERPILGRFSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVR
GAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLEDGKD
VRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQEHGGETIIPFSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFA
AIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVKAAGKYRQEGKTYVVQDGDIIFFKFNVSGGGKK

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Cellular comBiological Processonent
GO Term cytosol
4
GO Category Molecular Function
GO Term nucleotide binding
Presence of Splice variants No