LOC_Os08g09240

Expression Profile

RGAP LOCUS ID LOC_Os08g09240
RAP-DB ID Os08g0191600
Function autophagy-related protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 9

2) CELLO Prediction
localization Nuclear
score 1.016

3) NUCPRED Prediction
localization Non Nuclear
score 0.2

4) Y-Loc Prediction
localization Cytoplasm
score 98
confidence value 0.79
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsATG8c
Function assigned as per literature OsATG8c plays a role in autophagy in rice.
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31597279
Reference of localization https://www.mdpi.com/1422-0067/20/19/4956/htm
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.167
NLS score -0.22
Protein Sequence >LOC_Os08g09240.1 protein
MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENK
DEDGFLYMTYSGENTFGLFV

GO Analysis
1
GO Category Biological Process
GO Term catabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants YES