LOC_Os08g09210

Expression Profile

RGAP LOCUS ID LOC_Os08g09210
RAP-DB ID Os08g0191200
Function phosphoribosylamine--glycine ligase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Chloroplast
score 4.157

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.98
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) VAL1|GARS
Function assigned as per literature VAL1 is a crucial enzyme in the de novo purine biosynthesis pathway and is involved in regulating chloroplast development, chlorophyll metabolism, and cell division during leaf development in rice
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice protoplasts cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30102358
Reference of localization https://academic.oup.com/jxb/article/69/20/4791/5068403
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.097
NLS score -0.47
Protein Sequence >LOC_Os08g09210.2 protein
MASAAAAYGVGAPLKLAARRHGALALAGSHRCSGWKSSVSCPVPQAWMGSCSSVAMRRVASGSRLIVQASNSGGSSLKASLADASLLTEERITVLVIGGG
GREHALCYALNRSPSCDAVLCAPGNAGIAQSGDATCISDLDVSDSDAVIAFCCKRGVGMVVVGPEAPLVAGLVNDLVKAEIPAFGPSSEAAALEGSKDFM
KKLCDKYNIPTAKYRTFTDPAEAKQYVKDQGAPIVVKADGLAAGKGVVVAMTLDEAFEAIDSMLVQGSFGSAGSRVIIEEYLEGEEASFFALVDGENALP
LESAQDHKRVGDGDVGPNTGGMGAYSPAPIVTEELKHTIMDSIIIPTVQGMAAEGCKFVGVLYAGLMIEKKSGLPKLIEYNVRFGDPECQVLMMRLESDL
AQVLMSACRGELGDVSLTWSPEMAMVVVMASEGYPGSYKKGTVIRNLEKAEQVSPAVKIFHAGTALDGDGNLVAVGGRVLGITAKGKDIEEARARAYDAV
DVVDWPEGFFRRDIGWRALKHKQVANY

GO Analysis
1
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Molecular Function
GO Term catalytic activity
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES