LOC_Os08g08980

Expression Profile

RGAP LOCUS ID LOC_Os08g08980
RAP-DB ID Os08g0189300
Function cupin domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Extracellular
score 2.564

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.9
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGER1
Function assigned as per literature GER1 as a negative regulator of coleoptile elongation
Subcellular localization as per literature Endoplasmic reticulum (ER) bodies
Cells used for localization experiment Rice coleoptiles
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 17048141
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1055/s-2006-924561
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.08
NLS score -0.47
Protein Sequence >LOC_Os08g08980.1 protein
MASSSSLYLLAALLALASWQAIAFDPSPLQDFCVADMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARI
DYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGSKPPISDDV
LTKAFQVEKKVIDWLKSQFWESNY

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
3
GO Category Molecular Function
GO Term binding
Presence of Splice variants No