LOC_Os08g08820

Expression Profile

RGAP LOCUS ID LOC_Os08g08820
RAP-DB ID Os08g0187500
Function homeobox and START domains containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6.5

2) CELLO Prediction
localization Nuclear
score 2.252

3) NUCPRED Prediction
localization Non Nuclear
score 0.49

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category HB/HD-ZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Roc1
Function assigned as per literature ROC1 is a positive regulator of cold stress responses
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermis cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 26927068
Reference of localization http://www.mdpi.com/1422-0067/17/3/233
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 4
Number of Bipartite 0
Basic residues % 0.091
NLS score 1.8
Protein Sequence >LOC_Os08g08820.2 protein
MTPARRMPPVIGRNGVAYESPSAQLPLTQADMLDSHHLQQALQQQYFDQIPVTTTAAADSGDNMLHGRADAGGLVDEFESKSCSENVDGAGDGLSGDDQD
PNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENAQLRAENDKLRAENMRYKEALSSASCPNCG
GPAALGEMSFDEHHLRVENARLRDEIDRISGIAAKHVGKPPIVSFPVLSSPLAVAAARSPLDLAGAYGVVTPGLDMFGGAGDLLRGVHPLDADKPMIVEL
AVAAMDELVQMAQLDEPLWSSSSEPAAALLDEEEYARMFPRGLGPKQYGLKSEASRHGAVVIMTHSNLVEILMDVNQFATVFSSIVSRASTHEVLSTGVA
GNYNGALQVMSMEFQVPSPLVPTRESYFVRYCKNNSDGTWAVVDVSLDSLRPSPVQKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDSSVHNIYKPLVNS
GLAFGAKRWVGTLDRQCERLASAMASNIPNGDLGVITSVEGRKSMLKLAERMVASFCGGVTASVAHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLNA
ATSFWLPVPPAAVFDFLRDETSRSEWDILSNGGAVQEMAHIANGRDHGNSVSLLRVNSANSNQSNMLILQESCTDASGSYVVYAPVDIVAMNVVLNGGDP
DYVALLPSGFAILPDGPSGNAQAAVGENGSGSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVCRDSNPQ

GO Analysis
1
GO Category Biological Process
GO Term cell differentiation
2
GO Category Biological Process
GO Term multicellular organismal development
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term reproduction
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Biological Process
GO Term embryo development
8
GO Category Biological Process
GO Term biosynthetic process
9
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
10
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES