LOC_Os08g08220
| RGAP LOCUS ID | LOC_Os08g08220 |
| RAP-DB ID | Os08g0180300 |
| Function | EDA16, putative, expressed |
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
|
| localization | Nuclear |
| score | 14 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 4.297 |
3) NUCPRED Prediction |
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| localization | Nuclear |
| score | 0.9 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 100 |
| confidence value | 1 |
| Number Of Software Predicting Nucleus | 4 |
| Seed Specific | No |
| Transcription factor category | SNF2 |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | BRHIS1 |
| Function assigned as per literature | Role in initiation of innate immune responses in response to infection |
| Subcellular localization as per literature | Nucleus |
| Cells used for localization experiment | rice mesophyll protoplasts |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 26202491 |
| Reference of localization | http://embor.embopress.org/content/16/9/1192.long |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 4 |
| Number of PAT7 | 0 |
| Number of Bipartite | 3 |
| Basic residues % | 0.125 |
| NLS score | 2.92 |
| Protein Sequence | >LOC_Os08g08220.1 protein MLAGNMNNDNYIDLSSDSDIDFDFDSDDSVGGLDQELASSSSRPTENINGQYRTLPPSFTNGRHVDNARHALGSGDRAYPHSSSYRGSPNDSARATPASN RTDIVVKKHNGFASEENDNGKRILPSSFSNGRTTNAMHPVVASETRKFPPSFTNGNSQRLAENRMGKNVANGIGEPSSSRFPSRSSFGTDNKKVITDSDN EDVYVYGSSSSHRVLPPSFGRNSSANHSEFANGIDMQGRLNLENRIIDSDERAVYQEALQNIIQDKREDDLPEGVLSVPLLRHQKMALAWMVSKENSSHC AGGILADDQGLGKTVSTIALIQKQRIQQSKFMSVDSDRLKAEALNLDDDDEAAPVADNKGEQTKNDEPRKDLGAGSSSTAAGTGDVETCASLMNTAPDKT VERNVERKKKSKASTSSTMQSMTRPAAGTLVVCPASVLKQWANELTDKVGESAKLSVLVYHGGSRTKDPNELAKYDVVITTYTIVANEVPKQNADDDTDQ KNGEESSAGNKRKQPPKAQSKSKKKKKKLKDSDIYLASGPVARVRWFRVVLDEAQTIKNFRTQVAKACCGLRAKRRWCLSGTPIQNAIDELYSYFHFLKY DPYSTYNSFCTMIKHPIARNAVHGYKKLQTVLRIVLLRRTKETLIDGEPIIKLPPKTINLDKVDFTKEERAFYLTLEERSRQQFKAYAAAGTLKQNYANI LLMLLRLRQACDHPLLVKGHQSEYKGDGSIEMAKQLPKEMIINLLAKLEVGEFCSVCSDVPEDAVVTMCGHVFCYQCIYERITTDENMCPSPNCGNTLST DSVFSSGALRICMSGVSSSHASGSSSLDDESSSISQTSYISSKIQAAIDILNSIINTYALTDSDTVESNPSRVAPVKAIVFSQWTGMLDLLELSLNSNLI QYRRLDGTMSLNSRDKAVKDFNTDPEVRVMIMSLKAGNLGLNMVAACHVILLDLWWNPYAEDQAIDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEEKR AMVSSAFGEDKSGGHATRLTVDDLKYLFRF |
GO Analysis |
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| Presence of Splice variants | YES |