LOC_Os08g08210

Expression Profile

RGAP LOCUS ID LOC_Os08g08210
RAP-DB ID Os08g0180100
Function SET domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5

2) CELLO Prediction
localization Nuclear
score 3.397

3) NUCPRED Prediction
localization Non Nuclear
score 0.58

4) Y-Loc Prediction
localization Nuclear
score 99.8
confidence value 0.87
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category SET

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SDG701
Function assigned as per literature SDG701 as a key epigenetic factor that regulates rice flowering and reproduction as well as other traits of agricultural interest
Subcellular localization as per literature Nucleus
Cells used for localization experiment Tobacco leaf epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 28517045
Reference of localization https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.14596
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.136
NLS score -0.47
Protein Sequence >LOC_Os08g08210.1 protein
MKSSRFDFFVPKVAKIEVRLKNGYYARHGFSYIKNDIRSMCRDALRYKGRSDLGDMKQIVVAFIQLAKKLENPRLISDRDGTAVQKDSSDMSQYSSDLKL
KKKQSKTMSERRGANWTTAGADPSSRAFDREIKRSLSKLKKRDIDSGSETSDDDDGYSEGDETESETTVSDTESDLDVNSGAWDLKGNGMKLFESSESLT
DDRGWGARMTKASLVPPVTRKYEVIEKYLIVADEEEVLRKMRVALPDDYSEKLLSQKNGTENLELPEVKDYQPRKVPGDEVLEQEVYGIDPYTHNLLLEM
MPTELDWPSSDKHTFVEELLLNTLNKQVRQFTGSGNTPMVYPLKPVIEEIQKSAEESGDRRTSKMCLGMLKAMRNHPEYNYVAYRKGLGVVCNKTGGFGV
DDFVIEFFGEVYPSWRWYEKQDGIKHIQNNSDDQAPEFYNIMLERPKGDRDGYDLVFVDAMHKANYASRICHSCNPNCEAKVTAVDGHYQIGIYTVRPIA
EGEEITFDYNSVTESKEEHEASVCLCGSQICRGSYLNFSGEGAFEKVLMEFHGVLDRHSLLLQACEANSVSQQDLIDLGRAGLGTCLLAGLPGWLVAYTA
HLVRFIFFERQKLPHEIFKHNVDEKRQFFTDINMDSEKNDAEVQAEGVLNSRLQNLTHTLDKVRYVMRCIFGDPKNAPPPLVRLTGRSLVSAIWKGEGSL
VDELLESMEPHVEEDVLTDLKAKIRAHDPSGSEDIEGEIRSSLLWLRDELRTLSCTYKCRHDAAADLIHMYAYTKCFFRVRDYKTVKSPPVLISPLDLGP
KYADKLGPGFQEYCKTYPENYCLGQLIYWYSQNAEPESRLTRARKGCMSLPDVSSFYVKSVKPTQERVYGSRTVRFMLARMENQAQRPWPKDRIWVFKSD
PRFFGTPMMDAVLNNSPLDKEMVHWLKTRSNVFLG

GO Analysis
1
GO Category Biological Process
GO Term post-embryonic development
2
GO Category Biological Process
GO Term flower development
3
GO Category Molecular Function
GO Term transferase activity
4
GO Category Biological Process
GO Term cellular component organization
5
GO Category Biological Process
GO Term protein modification process
6
GO Category Biological Process
GO Term reproduction
Presence of Splice variants No