LOC_Os08g07740

Expression Profile

RGAP LOCUS ID LOC_Os08g07740
RAP-DB ID Os08g0174500
Function histone-like transcription factor and archaeal histone, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 3.004

3) NUCPRED Prediction
localization Non Nuclear
score 0.33

4) Y-Loc Prediction
localization Nuclear
score 95.79
confidence value 0.39
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category CCAAT/NF_YB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Hd5|DTH8|Ghd8|OsHAP3H|LHD1|EF8|CAR8|OsNF-YB11
Function assigned as per literature DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 20566706
Reference of localization http://www.plantphysiol.org/content/153/4/1747.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.091
NLS score -0.47
Protein Sequence >LOC_Os08g07740.1 protein
MKSRKSYGHLLSPVGSPPLDNESGEAAAAAAAGGGGCGSSAGYVVYGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISF
VTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADVLGGAGGAAAARHGEGGCCGGGGGGADGVVIDGHYPLAGGLSHSHH
GHQQQDGGGDVGLMMGGGDAGVGYNAGAGSTTTAFYAPAATAASGNKAYCGGDGSRVMEFEGIGGEEESGGGGGGGERGFAGHLHGVQWFRLKRNTN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Cellular comBiological Processonent
GO Term intracellular
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No